Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EHA59260.1Radical SAM domain protein; KEGG: pmf:P9303_23771 Fe-S oxidoreductase; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB. (534 aa)    
Predicted Functional Partners:
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
     
  0.785
EHA63183.1
KEGG: npu:Npun_F3905 hypothetical protein.
  
     0.750
EHA63890.1
KEGG: pmj:P9211_09671 hypothetical protein.
  
     0.741
EHA63636.1
KEGG: pmj:P9211_10191 hypothetical protein.
  
     0.720
EHA63008.1
KEGG: pmt:PMT1182 hypothetical protein.
  
     0.703
EHA64224.1
KEGG: pmf:P9303_07371 single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding.
  
    0.701
EHA64249.1
KEGG: pmf:P9303_07011 hypothetical protein.
  
     0.701
EHA60623.1
KEGG: pmf:P9303_02201 hypothetical protein.
  
     0.678
EHA62511.1
PFAM: HTH transcriptional regulator, GntR; KEGG: pmf:P9303_01531 putative transcriptional regulator.
  
     0.671
chlB
Light-independent protochlorophyllide reductase subunit B; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (ChlN-ChlB) is the catalytic component of the complex.
   
 
  0.650
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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