EHA59357.1 protein (Synechococcus sp. WH 8016)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Synechococcus sp. WH 8016

NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EHA59357.1	EHA60611.1	Syn8016DRAFT_2727	Syn8016DRAFT_2398	3'-5' exonuclease; KEGG: pmt:PMT1703 putative ribonuclease D; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease.	TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpB type; PFAM: RNA helicase, ATP-dependent, HrpB type, C-terminal; Helicase, C-terminal; Helicase-associated domain; KEGG: pmf:P9303_02411 DEAD/DEAH box helicase domain-containing protein; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase-associated domain.	0.889
EHA59357.1	EHA63217.1	Syn8016DRAFT_2727	Syn8016DRAFT_0258	3'-5' exonuclease; KEGG: pmt:PMT1703 putative ribonuclease D; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease.	KEGG: pmt:PMT0874 hypothetical protein.	0.845
EHA59357.1	EHA63332.1	Syn8016DRAFT_2727	Syn8016DRAFT_0373	3'-5' exonuclease; KEGG: pmt:PMT1703 putative ribonuclease D; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease.	Ribonuclease II; KEGG: pmf:P9303_14471 putative acetazolamide conferring resistance protein Zam; PFAM: Ribonuclease II/R; Ribonuclease B, N-terminal OB domain; Ribosomal protein S1, RNA-binding domain; SMART: Ribonuclease II/R; Cold shock protein; RNA-binding domain, S1; Belongs to the RNR ribonuclease family.	0.952
EHA59357.1	EHA63372.1	Syn8016DRAFT_2727	Syn8016DRAFT_0413	3'-5' exonuclease; KEGG: pmt:PMT1703 putative ribonuclease D; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease.	Ribonuclease II; KEGG: pmf:P9303_14771 ribonuclease II; PFAM: Ribonuclease II/R; SMART: Ribonuclease II/R.	0.952
EHA59357.1	EHA63628.1	Syn8016DRAFT_2727	Syn8016DRAFT_0669	3'-5' exonuclease; KEGG: pmt:PMT1703 putative ribonuclease D; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease.	KEGG: pmt:PMT0386 putative DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease.	0.845
EHA59357.1	EHA64296.1	Syn8016DRAFT_2727	Syn8016DRAFT_1339	3'-5' exonuclease; KEGG: pmt:PMT1703 putative ribonuclease D; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease.	Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.	0.838
EHA59357.1	pnp	Syn8016DRAFT_2727	Syn8016DRAFT_1330	3'-5' exonuclease; KEGG: pmt:PMT1703 putative ribonuclease D; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease.	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.833
EHA59357.1	rph	Syn8016DRAFT_2727	Syn8016DRAFT_1535	3'-5' exonuclease; KEGG: pmt:PMT1703 putative ribonuclease D; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.966
EHA59357.1	rpsD	Syn8016DRAFT_2727	Syn8016DRAFT_2576	3'-5' exonuclease; KEGG: pmt:PMT1703 putative ribonuclease D; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease.	Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.905
EHA59357.1	rpsK	Syn8016DRAFT_2727	Syn8016DRAFT_2674	3'-5' exonuclease; KEGG: pmt:PMT1703 putative ribonuclease D; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.896
EHA60611.1	EHA59357.1	Syn8016DRAFT_2398	Syn8016DRAFT_2727	TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpB type; PFAM: RNA helicase, ATP-dependent, HrpB type, C-terminal; Helicase, C-terminal; Helicase-associated domain; KEGG: pmf:P9303_02411 DEAD/DEAH box helicase domain-containing protein; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase-associated domain.	3'-5' exonuclease; KEGG: pmt:PMT1703 putative ribonuclease D; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease.	0.889
EHA60611.1	EHA63217.1	Syn8016DRAFT_2398	Syn8016DRAFT_0258	TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpB type; PFAM: RNA helicase, ATP-dependent, HrpB type, C-terminal; Helicase, C-terminal; Helicase-associated domain; KEGG: pmf:P9303_02411 DEAD/DEAH box helicase domain-containing protein; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase-associated domain.	KEGG: pmt:PMT0874 hypothetical protein.	0.484
EHA60611.1	EHA63332.1	Syn8016DRAFT_2398	Syn8016DRAFT_0373	TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpB type; PFAM: RNA helicase, ATP-dependent, HrpB type, C-terminal; Helicase, C-terminal; Helicase-associated domain; KEGG: pmf:P9303_02411 DEAD/DEAH box helicase domain-containing protein; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase-associated domain.	Ribonuclease II; KEGG: pmf:P9303_14471 putative acetazolamide conferring resistance protein Zam; PFAM: Ribonuclease II/R; Ribonuclease B, N-terminal OB domain; Ribosomal protein S1, RNA-binding domain; SMART: Ribonuclease II/R; Cold shock protein; RNA-binding domain, S1; Belongs to the RNR ribonuclease family.	0.525
EHA60611.1	EHA63372.1	Syn8016DRAFT_2398	Syn8016DRAFT_0413	TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpB type; PFAM: RNA helicase, ATP-dependent, HrpB type, C-terminal; Helicase, C-terminal; Helicase-associated domain; KEGG: pmf:P9303_02411 DEAD/DEAH box helicase domain-containing protein; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase-associated domain.	Ribonuclease II; KEGG: pmf:P9303_14771 ribonuclease II; PFAM: Ribonuclease II/R; SMART: Ribonuclease II/R.	0.525
EHA60611.1	EHA63628.1	Syn8016DRAFT_2398	Syn8016DRAFT_0669	TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpB type; PFAM: RNA helicase, ATP-dependent, HrpB type, C-terminal; Helicase, C-terminal; Helicase-associated domain; KEGG: pmf:P9303_02411 DEAD/DEAH box helicase domain-containing protein; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase-associated domain.	KEGG: pmt:PMT0386 putative DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease.	0.484
EHA60611.1	rph	Syn8016DRAFT_2398	Syn8016DRAFT_1535	TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpB type; PFAM: RNA helicase, ATP-dependent, HrpB type, C-terminal; Helicase, C-terminal; Helicase-associated domain; KEGG: pmf:P9303_02411 DEAD/DEAH box helicase domain-containing protein; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase-associated domain.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.782
EHA60611.1	rpsD	Syn8016DRAFT_2398	Syn8016DRAFT_2576	TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpB type; PFAM: RNA helicase, ATP-dependent, HrpB type, C-terminal; Helicase, C-terminal; Helicase-associated domain; KEGG: pmf:P9303_02411 DEAD/DEAH box helicase domain-containing protein; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase-associated domain.	Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.948
EHA60611.1	rpsK	Syn8016DRAFT_2398	Syn8016DRAFT_2674	TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpB type; PFAM: RNA helicase, ATP-dependent, HrpB type, C-terminal; Helicase, C-terminal; Helicase-associated domain; KEGG: pmf:P9303_02411 DEAD/DEAH box helicase domain-containing protein; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase-associated domain.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.943
EHA63217.1	EHA59357.1	Syn8016DRAFT_0258	Syn8016DRAFT_2727	KEGG: pmt:PMT0874 hypothetical protein.	3'-5' exonuclease; KEGG: pmt:PMT1703 putative ribonuclease D; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease.	0.845
EHA63217.1	EHA60611.1	Syn8016DRAFT_0258	Syn8016DRAFT_2398	KEGG: pmt:PMT0874 hypothetical protein.	TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpB type; PFAM: RNA helicase, ATP-dependent, HrpB type, C-terminal; Helicase, C-terminal; Helicase-associated domain; KEGG: pmf:P9303_02411 DEAD/DEAH box helicase domain-containing protein; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase-associated domain.	0.484