STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA59369.1PFAM: PBS lyase HEAT-like repeat; KEGG: ter:Tery_5046 heat domain-containing protein; overlaps another CDS with the same product name. (211 aa)    
Predicted Functional Partners:
EHA59370.1
PFAM: PBS lyase HEAT-like repeat; KEGG: syf:Synpcc7942_1054 heat repeat-containing PBS lyase; overlaps another CDS with the same product name.
 
 
 0.999
EHA59372.1
KEGG: cyt:cce_2652 phycocyanin alpha subunit; TIGRFAM: Phycocyanin, alpha subunit; PFAM: Phycobilisome, alpha/beta subunit.
 
  
 0.991
EHA59373.1
KEGG: mar:MAE_24450 phycocyanin beta subunit; TIGRFAM: Phycocyanin, beta subunit; PFAM: Phycobilisome, alpha/beta subunit.
 
  
 0.988
cpcT
Protein of unknown function DUF1001; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
 
  
 0.979
EHA60571.1
PFAM: Phycobilisome linker domain; KEGG: syf:Synpcc7942_2030 phycobilisome rod-core linker polypeptide; Belongs to the phycobilisome linker protein family.
  
  
 0.971
EHA59392.1
PFAM: Phycobilisome linker domain; CpcD phycobilisome linker-like; KEGG: gvi:gvip183 phycoerythrin-associated linker protein; Belongs to the phycobilisome linker protein family.
  
  
 0.885
cpcS
Protein of unknown function CpeS/Ycf58; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
  
 0.863
efp
Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
    
 0.830
EHA60408.1
PFAM: Phycobilisome linker domain; Phycobilisome, alpha/beta subunit; KEGG: syf:Synpcc7942_0328 phycobilisome core-membrane linker polypeptide; Belongs to the phycobilisome linker protein family.
  
  
 0.827
EHA60409.1
Phycocyanin; PFAM: Phycobilisome, alpha/beta subunit; KEGG: syf:Synpcc7942_0327 allophycocyanin alpha chain.
  
   
 0.819
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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