Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EHA59101.1 | EHA59175.1 | Syn8016DRAFT_2824 | Syn8016DRAFT_2898 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: pmf:P9303_00881 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, clamp; DNA mismatch repair protein MutS, core; SMART: DNA mismatch repair protein MutS, C-terminal. | 0.984 |
| EHA59101.1 | EHA59176.1 | Syn8016DRAFT_2824 | Syn8016DRAFT_2899 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | PFAM: DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, core; KEGG: pmf:P9303_00881 DNA mismatch repair protein MutS. | 0.984 |
| EHA59101.1 | EHA60243.1 | Syn8016DRAFT_2824 | Syn8016DRAFT_2625 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | TIGRFAM: DNA helicase, ATP-dependent, RecQ type; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: pmf:P9303_21731 superfamily II DNA helicase; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal. | 0.894 |
| EHA59101.1 | polA | Syn8016DRAFT_2824 | Syn8016DRAFT_0084 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.999 |
| EHA59101.1 | recA | Syn8016DRAFT_2824 | Syn8016DRAFT_2700 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Protein recA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.942 |
| EHA59101.1 | topA | Syn8016DRAFT_2824 | Syn8016DRAFT_1355 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.811 |
| EHA59175.1 | EHA59101.1 | Syn8016DRAFT_2898 | Syn8016DRAFT_2824 | KEGG: pmf:P9303_00881 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, clamp; DNA mismatch repair protein MutS, core; SMART: DNA mismatch repair protein MutS, C-terminal. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.984 |
| EHA59175.1 | EHA59176.1 | Syn8016DRAFT_2898 | Syn8016DRAFT_2899 | KEGG: pmf:P9303_00881 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, clamp; DNA mismatch repair protein MutS, core; SMART: DNA mismatch repair protein MutS, C-terminal. | PFAM: DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, core; KEGG: pmf:P9303_00881 DNA mismatch repair protein MutS. | 0.990 |
| EHA59175.1 | EHA59177.1 | Syn8016DRAFT_2898 | Syn8016DRAFT_2900 | KEGG: pmf:P9303_00881 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, clamp; DNA mismatch repair protein MutS, core; SMART: DNA mismatch repair protein MutS, C-terminal. | Photosystem II core protein PsbZ; Controls the interaction of photosystem II (PSII) cores with the light-harvesting antenna. | 0.452 |
| EHA59175.1 | EHA60082.1 | Syn8016DRAFT_2898 | Syn8016DRAFT_2463 | KEGG: pmf:P9303_00881 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, clamp; DNA mismatch repair protein MutS, core; SMART: DNA mismatch repair protein MutS, C-terminal. | KEGG: syf:Synpcc7942_1393 histone deacetylase/AcuC/AphA family protein-like; PFAM: Histone deacetylase superfamily. | 0.611 |
| EHA59175.1 | EHA60243.1 | Syn8016DRAFT_2898 | Syn8016DRAFT_2625 | KEGG: pmf:P9303_00881 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, clamp; DNA mismatch repair protein MutS, core; SMART: DNA mismatch repair protein MutS, C-terminal. | TIGRFAM: DNA helicase, ATP-dependent, RecQ type; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: pmf:P9303_21731 superfamily II DNA helicase; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal. | 0.802 |
| EHA59175.1 | mutS2 | Syn8016DRAFT_2898 | Syn8016DRAFT_2263 | KEGG: pmf:P9303_00881 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, clamp; DNA mismatch repair protein MutS, core; SMART: DNA mismatch repair protein MutS, C-terminal. | MutS2 protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | 0.731 |
| EHA59175.1 | polA | Syn8016DRAFT_2898 | Syn8016DRAFT_0084 | KEGG: pmf:P9303_00881 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, clamp; DNA mismatch repair protein MutS, core; SMART: DNA mismatch repair protein MutS, C-terminal. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.985 |
| EHA59175.1 | priA | Syn8016DRAFT_2898 | Syn8016DRAFT_1272 | KEGG: pmf:P9303_00881 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, clamp; DNA mismatch repair protein MutS, core; SMART: DNA mismatch repair protein MutS, C-terminal. | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.477 |
| EHA59175.1 | recA | Syn8016DRAFT_2898 | Syn8016DRAFT_2700 | KEGG: pmf:P9303_00881 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, clamp; DNA mismatch repair protein MutS, core; SMART: DNA mismatch repair protein MutS, C-terminal. | Protein recA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.513 |
| EHA59175.1 | topA | Syn8016DRAFT_2898 | Syn8016DRAFT_1355 | KEGG: pmf:P9303_00881 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, clamp; DNA mismatch repair protein MutS, core; SMART: DNA mismatch repair protein MutS, C-terminal. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.650 |
| EHA59176.1 | EHA59101.1 | Syn8016DRAFT_2899 | Syn8016DRAFT_2824 | PFAM: DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, core; KEGG: pmf:P9303_00881 DNA mismatch repair protein MutS. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.984 |
| EHA59176.1 | EHA59175.1 | Syn8016DRAFT_2899 | Syn8016DRAFT_2898 | PFAM: DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, core; KEGG: pmf:P9303_00881 DNA mismatch repair protein MutS. | KEGG: pmf:P9303_00881 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, clamp; DNA mismatch repair protein MutS, core; SMART: DNA mismatch repair protein MutS, C-terminal. | 0.990 |
| EHA59176.1 | EHA59177.1 | Syn8016DRAFT_2899 | Syn8016DRAFT_2900 | PFAM: DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, core; KEGG: pmf:P9303_00881 DNA mismatch repair protein MutS. | Photosystem II core protein PsbZ; Controls the interaction of photosystem II (PSII) cores with the light-harvesting antenna. | 0.545 |
| EHA59176.1 | EHA60082.1 | Syn8016DRAFT_2899 | Syn8016DRAFT_2463 | PFAM: DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, core; KEGG: pmf:P9303_00881 DNA mismatch repair protein MutS. | KEGG: syf:Synpcc7942_1393 histone deacetylase/AcuC/AphA family protein-like; PFAM: Histone deacetylase superfamily. | 0.611 |
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