EHA58621.1 protein (Synechococcus sp. WH 8016)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EHA58621.1

PFAM: Protein of unknown function DUF192; KEGG: pmf:P9303_19321 hypothetical protein. (142 aa)

Predicted Functional Partners:

nadK-2

0.814

EHA58620.1

0.773

EHA58618.1

0.521

EHA63639.1

0.400

Your Current Organism:

Synechococcus sp. WH 8016

NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EHA58618.1	EHA58620.1	Syn8016DRAFT_2934	Syn8016DRAFT_2936	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pmf:P9303_11831 zeta-carotene desaturase-like protein.	Transcriptional regulator, winged helix family; KEGG: amr:AM1_0794 two-component transcriptional regulator; PFAM: Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, C-terminal.	0.521
EHA58618.1	EHA58621.1	Syn8016DRAFT_2934	Syn8016DRAFT_2937	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pmf:P9303_11831 zeta-carotene desaturase-like protein.	PFAM: Protein of unknown function DUF192; KEGG: pmf:P9303_19321 hypothetical protein.	0.521
EHA58618.1	nadK-2	Syn8016DRAFT_2934	Syn8016DRAFT_2935	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pmf:P9303_11831 zeta-carotene desaturase-like protein.	Inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	0.521
EHA58620.1	EHA58618.1	Syn8016DRAFT_2936	Syn8016DRAFT_2934	Transcriptional regulator, winged helix family; KEGG: amr:AM1_0794 two-component transcriptional regulator; PFAM: Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, C-terminal.	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pmf:P9303_11831 zeta-carotene desaturase-like protein.	0.521
EHA58620.1	EHA58621.1	Syn8016DRAFT_2936	Syn8016DRAFT_2937	Transcriptional regulator, winged helix family; KEGG: amr:AM1_0794 two-component transcriptional regulator; PFAM: Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, C-terminal.	PFAM: Protein of unknown function DUF192; KEGG: pmf:P9303_19321 hypothetical protein.	0.773
EHA58620.1	nadK-2	Syn8016DRAFT_2936	Syn8016DRAFT_2935	Transcriptional regulator, winged helix family; KEGG: amr:AM1_0794 two-component transcriptional regulator; PFAM: Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, C-terminal.	Inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	0.823
EHA58621.1	EHA58618.1	Syn8016DRAFT_2937	Syn8016DRAFT_2934	PFAM: Protein of unknown function DUF192; KEGG: pmf:P9303_19321 hypothetical protein.	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pmf:P9303_11831 zeta-carotene desaturase-like protein.	0.521
EHA58621.1	EHA58620.1	Syn8016DRAFT_2937	Syn8016DRAFT_2936	PFAM: Protein of unknown function DUF192; KEGG: pmf:P9303_19321 hypothetical protein.	Transcriptional regulator, winged helix family; KEGG: amr:AM1_0794 two-component transcriptional regulator; PFAM: Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, C-terminal.	0.773
EHA58621.1	EHA63639.1	Syn8016DRAFT_2937	Syn8016DRAFT_0680	PFAM: Protein of unknown function DUF192; KEGG: pmf:P9303_19321 hypothetical protein.	FHA modulated glycosyl transferase/transpeptidase; KEGG: syf:Synpcc7942_2000 penicillin-binding protein 1A; PFAM: Glycosyl transferase, family 51; Forkhead-associated (FHA) domain; Penicillin-binding protein, transpeptidase; SMART: Forkhead-associated (FHA) domain.	0.400
EHA58621.1	nadK-2	Syn8016DRAFT_2937	Syn8016DRAFT_2935	PFAM: Protein of unknown function DUF192; KEGG: pmf:P9303_19321 hypothetical protein.	Inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	0.814
EHA63639.1	EHA58621.1	Syn8016DRAFT_0680	Syn8016DRAFT_2937	FHA modulated glycosyl transferase/transpeptidase; KEGG: syf:Synpcc7942_2000 penicillin-binding protein 1A; PFAM: Glycosyl transferase, family 51; Forkhead-associated (FHA) domain; Penicillin-binding protein, transpeptidase; SMART: Forkhead-associated (FHA) domain.	PFAM: Protein of unknown function DUF192; KEGG: pmf:P9303_19321 hypothetical protein.	0.400
nadK-2	EHA58618.1	Syn8016DRAFT_2935	Syn8016DRAFT_2934	Inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pmf:P9303_11831 zeta-carotene desaturase-like protein.	0.521
nadK-2	EHA58620.1	Syn8016DRAFT_2935	Syn8016DRAFT_2936	Inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	Transcriptional regulator, winged helix family; KEGG: amr:AM1_0794 two-component transcriptional regulator; PFAM: Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, C-terminal.	0.823
nadK-2	EHA58621.1	Syn8016DRAFT_2935	Syn8016DRAFT_2937	Inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	PFAM: Protein of unknown function DUF192; KEGG: pmf:P9303_19321 hypothetical protein.	0.814