Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EHA58631.1KEGG: pmt:PMT1513 hypothetical protein. (340 aa)    
Predicted Functional Partners:
EHA62419.1
PFAM: Polysaccharide export protein; Soluble ligand binding domain; KEGG: pmc:P9515_13851 hypothetical protein.
     
  0.733
EHA63302.1
OstA family protein; PFAM: Organic solvent tolerance-like, N-terminal; KEGG: pmt:PMT0573 hypothetical protein.
     
 0.689
EHA63072.1
KEGG: pmf:P9303_08961 hypothetical protein.
   
 
 0.676
secA
Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.
    
 
 0.526
EHA58632.1
KEGG: pmt:PMT1514 neuromedin U.
       0.494
EHA62523.1
KEGG: pmt:PMT0078 hypothetical protein.
    
 
 0.484
EHA64402.1
PFAM: Bacterial surface antigen (D15); Surface antigen variable number; Polypeptide-transport-associated, ShlB-type; KEGG: pmf:P9303_05491 outer envelope membrane protein.
    
 
 0.443
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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