STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0096Putative RNA polymerase sigma factor, sigma-70 family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. (299 aa)    
Predicted Functional Partners:
parB
Plasmid partitioning protein; Function of strongly homologous gene; enzyme.
 
     0.957
XM1_0098
Function of strongly homologous gene; enzyme.
 
     0.951
XM1_0099
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.897
XM1_1539
Putative ATPase MipZ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.590
rsmG
Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
  
  
 0.531
XM1_3066
Protein of unknown function; No homology to any previously reported sequences.
  
 
 
 0.524
XM1_0125
Putative ATPase involved in chromosome partitioning; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.523
parA-2
Chromosome partitioning protein ParA; Function of homologous gene experimentally demonstrated in an other organism; factor.
  
 
 0.523
XM1_1929
Putative protein parA (CobQ/CobB/MinD/ParA nucleotide binding domain,6-168); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
 
 0.523
XM1_2187
Putative Chromosome partitioning ATPase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
 
 0.523
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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