STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0124Putative Signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (441 aa)    
Predicted Functional Partners:
ompR
DNA-binding response regulator in two-component regulatory system with EnvZ; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 0.996
ompR-3
Transcriptional regulatory protein OmpR; Function of strongly homologous gene; regulator.
 
 
 0.799
petP
HTH-type transcriptional regulator PetP; Function of homologous gene experimentally demonstrated in an other organism; regulator.
  
  
 0.796
XM1_4027
Putative response regulator receiver modulated diguanylate cyclase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.759
XM1_4283
Two-component system, OmpR family, response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
 0.737
XM1_2449
Putative hybrid sensor and regulator (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
 0.723
phoB
Two-component system, OmpR family, phosphate regulon response regulator PhoB; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 
 0.716
arcA
Two-component system, OmpR family, torCAD operon response regulator TorR; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 
 0.702
XM1_3114
Putative signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
0.690
XM1_4030
Putative hybrid sensor and regulator (Signal transduction histidine kinase, homodimeric 904-989; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
0.688
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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