STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mmsMagnetic particle membrane specific GTPase P16; Function of strongly homologous gene; enzyme. (145 aa)    
Predicted Functional Partners:
XM1_4432
Putative poly-beta-hydroxybutyrate polymerase C; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.709
XM1_4389
Cell shape determining protein MreD; Function of strongly homologous gene; structure.
  
     0.646
mamF
Magnetosome protein MamF; Function of strongly homologous gene; enzyme.
      
 0.613
mamF-2
Magnetosome protein MamF; Function of strongly homologous gene; enzyme.
      
 0.613
mamE
Magnetosome protein MamE; Function of strongly homologous gene; putative enzyme.
      
 0.613
mamW
Magnetosome protein MamW; Function of strongly homologous gene; membrane component.
      
 0.613
mamE-2
Magnetosome protein MamE; Function of strongly homologous gene; putative enzyme.
      
 0.613
mamF-3
Magnetosome protein MamF; Function of strongly homologous gene; membrane component.
      
 0.613
dnaB
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
       0.589
XM1_1315
Homologs of previously reported genes of unknown function.
  
     0.587
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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