STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phaZPutative SOS mutagenesis and repair protein UmuD (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (408 aa)    
Predicted Functional Partners:
phbC
Poly-beta-hydroxybutyrate polymerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.962
XM1_4432
Putative poly-beta-hydroxybutyrate polymerase C; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.937
XM1_0157
Homologs of previously reported genes of unknown function; Belongs to the UPF0260 family.
       0.814
XM1_4435
Putative polyhydroxyalkanoate synthesis repressor PhaR-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
   
 0.718
phbB
Acetoacetyl-CoA reductase phbB; Function of strongly homologous gene; enzyme.
  
   
 0.661
ompR-2
DNA-binding response regulator in two-component regulatory system with EnvZ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.576
XM1_3493
Putative dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
   
 0.547
cobB
Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
       0.483
XM1_0161
Putative two-component sensor histidine-kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.470
cobA
Uroporphyrinogen-III C-methyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the precorrin methyltransferase family.
       0.463
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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