STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
flbDConserved protein of unknown function; Function of homologous gene experimentally demonstrated in an other organism; regulator. (458 aa)    
Predicted Functional Partners:
fleN
Flagellar number regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator.
  
 
 0.936
flhA
Conserved protein of unknown function; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.
 
  
 0.920
fliH
Putative metal-binding protein CopG protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
 
  
 0.918
flhF
Protein of unknown function (Methyl-accepting chemotaxis protein (MCP) signaling domain 365-548); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.888
fliN
Flagellar motor switching and energizing component FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
 
  
 0.875
fliG
Putative metal dependent phosphohydrolase; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
 
  
 0.854
rpoN
RNA polymerase sigma-54 factor(RNA polymerase sigma factor 54,11-496); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.791
FliF
Conserved exported protein of unknown function(Cytochrome c domain,10-223); The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
  
 0.787
XM1_0182
Homologs of previously reported genes of unknown function.
       0.782
XM1_4672
Putative histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.778
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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