STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fliQPeptidase U32 family (collagenase-like); Function of homologous gene experimentally demonstrated in an other organism; enzyme. (301 aa)    
Predicted Functional Partners:
yhbU
Peptidase (collagenase-like); Function of strongly homologous gene; enzyme.
 
 
 0.986
XM1_0185
Putative lipid carrier protein（sterol-binding domain） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
  
 0.972
XM1_2523
Putative Peptidase U32 (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.904
XM1_3320
Conserved membrane protein of unknown function(containing NnrS domain,17-398); Homologs of previously reported genes of unknown function.
 
    0.608
XM1_2031
Cytochrome c, mono-and diheme variants; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
  
    0.604
nirF
Protein NirF; Function of strongly homologous gene; enzyme.
  
    0.593
XM1_3818
Conserved membrane protein of unknown function(containing NnrS domain 15-187); Homologs of previously reported genes of unknown function.
 
    0.582
XM1_2038
Putative Nitrite reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.535
XM1_0188
Homologs of previously reported genes of unknown function.
       0.523
flgC
Flagellar component of cell-proximal portion of basal-body rod; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
    0.520
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.