STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0242Conserved protein of unknown function （contain Heat shock protein DnaJ N-terminal） Homologs of previously reported genes of unknown function. (161 aa)    
Predicted Functional Partners:
XM1_0241
Putative Anti-sigma F factor antagonist; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.770
gtaB
UTP--glucose-1-phosphate uridylyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.523
acsA
Acetoacetyl-coenzyme A synthetase (Acetoacetate--CoA ligase 1) (Acyl-activating enzyme 1); Function of strongly homologous gene; enzyme.
       0.514
rkpK
UDP-glucose 6-dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.503
XM1_0440
Putative inhibitor of MCP methylation, CheC-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
    
   0.493
hyaC
Hydrogenase 1, b-type cytochrome subunit; Function of homologous gene experimentally demonstrated in an other organism; carrier.
  
    0.474
XM1_3133
Conserved hypothetical protein(containing Ubiquinol-cytochrome c chaperone, CBP3 domain,9-184); Homologs of previously reported genes of unknown function.
  
     0.422
ecaA
Carbonic anhydrase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.402
XM1_0238
Homologs of previously reported genes of unknown function.
       0.401
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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