STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0252Putative ATPase, AAA family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (281 aa)    
Predicted Functional Partners:
XM1_0254
Homologs of previously reported genes of unknown function.
 
    0.966
XM1_0253
Conserved protein of unknown function（Haemerythrin-like, metal-binding） Homologs of previously reported genes of unknown function.
       0.784
norD
NorD protein required for nitric oxide reductase (Nor) activity; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.489
XM1_0255
Signal transduction histidine kinase; Function of strongly homologous gene; enzyme.
       0.484
ytsJ
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
    0.424
dme
NAD-dependent malic enzyme; Function of strongly homologous gene; putative enzyme.
  
    0.424
XM1_0251
Homologs of previously reported genes of unknown function.
       0.422
speC
Ornithine decarboxylase; Function of strongly homologous gene; enzyme.
   
 
 0.421
XM1_1492
Homologs of previously reported genes of unknown function.
  
  
 0.407
XM1_3447
Putative Acyl-CoA dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.402
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.