STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0318Putative TRAP-type uncharacterized transport system (TAXI family), periplasmic component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (347 aa)    
Predicted Functional Partners:
XM1_4632
Putative transporter TrapT family, fused dctQ-M subunits, C4-dicarboxylate transport; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
    0.872
dnaX
DNA polymerase III, gamma/tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
       0.656
XM1_0320
Conserved protein of unknown function （YbaB-like DNA-binding protein） Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
       0.656
XM1_4631
Conserved protein of unknown function (DUF 1850); Homologs of previously reported genes of unknown function.
 
    0.593
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
       0.587
XM1_0317
Homologs of previously reported genes of unknown function.
       0.539
XM1_2692
Putative TRAP-type C4-dicarboxylate transport system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
   
 0.470
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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