Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| XM1_0317 | XM1_0318 | XM1_0317 | XM1_0318 | Homologs of previously reported genes of unknown function. | Putative TRAP-type uncharacterized transport system (TAXI family), periplasmic component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | 0.539 |
| XM1_0317 | XM1_0320 | XM1_0317 | XM1_0320 | Homologs of previously reported genes of unknown function. | Conserved protein of unknown function （YbaB-like DNA-binding protein） Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.452 |
| XM1_0317 | dnaX | XM1_0317 | XM1_0319 | Homologs of previously reported genes of unknown function. | DNA polymerase III, gamma/tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.452 |
| XM1_0317 | recR | XM1_0317 | XM1_0321 | Homologs of previously reported genes of unknown function. | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.413 |
| XM1_0318 | XM1_0317 | XM1_0318 | XM1_0317 | Putative TRAP-type uncharacterized transport system (TAXI family), periplasmic component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | Homologs of previously reported genes of unknown function. | 0.539 |
| XM1_0318 | XM1_0320 | XM1_0318 | XM1_0320 | Putative TRAP-type uncharacterized transport system (TAXI family), periplasmic component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | Conserved protein of unknown function （YbaB-like DNA-binding protein） Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.656 |
| XM1_0318 | dnaX | XM1_0318 | XM1_0319 | Putative TRAP-type uncharacterized transport system (TAXI family), periplasmic component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | DNA polymerase III, gamma/tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.656 |
| XM1_0318 | recR | XM1_0318 | XM1_0321 | Putative TRAP-type uncharacterized transport system (TAXI family), periplasmic component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.587 |
| XM1_0320 | XM1_0317 | XM1_0320 | XM1_0317 | Conserved protein of unknown function （YbaB-like DNA-binding protein） Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Homologs of previously reported genes of unknown function. | 0.452 |
| XM1_0320 | XM1_0318 | XM1_0320 | XM1_0318 | Conserved protein of unknown function （YbaB-like DNA-binding protein） Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Putative TRAP-type uncharacterized transport system (TAXI family), periplasmic component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | 0.656 |
| XM1_0320 | acpP | XM1_0320 | XM1_2865 | Conserved protein of unknown function （YbaB-like DNA-binding protein） Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Acyl carrier protein (ACP); Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.617 |
| XM1_0320 | clpP | XM1_0320 | XM1_3641 | Conserved protein of unknown function （YbaB-like DNA-binding protein） Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.475 |
| XM1_0320 | dnaX | XM1_0320 | XM1_0319 | Conserved protein of unknown function （YbaB-like DNA-binding protein） Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | DNA polymerase III, gamma/tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.931 |
| XM1_0320 | fliR | XM1_0320 | XM1_0202 | Conserved protein of unknown function （YbaB-like DNA-binding protein） Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Flagellar export pore protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family. | 0.493 |
| XM1_0320 | recR | XM1_0320 | XM1_0321 | Conserved protein of unknown function （YbaB-like DNA-binding protein） Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.992 |
| XM1_0320 | rimP | XM1_0320 | XM1_0290 | Conserved protein of unknown function （YbaB-like DNA-binding protein） Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Ribosome maturation factor RimP; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.750 |
| XM1_0320 | tig | XM1_0320 | XM1_3642 | Conserved protein of unknown function （YbaB-like DNA-binding protein） Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Trigger factor, chaperone involved in cell division; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.486 |
| XM1_0320 | yajC | XM1_0320 | XM1_3276 | Conserved protein of unknown function （YbaB-like DNA-binding protein） Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Immunogenic membrane protein YajC; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions. | 0.458 |
| acpP | XM1_0320 | XM1_2865 | XM1_0320 | Acyl carrier protein (ACP); Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Conserved protein of unknown function （YbaB-like DNA-binding protein） Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.617 |
| acpP | clpP | XM1_2865 | XM1_3641 | Acyl carrier protein (ACP); Carrier of the growing fatty acid chain in fatty acid biosynthesis. | ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.409 |
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