STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0365Putative toxin antitoxin plasmid stabilization system ParE; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Belongs to the RelE toxin family. (103 aa)    
Predicted Functional Partners:
XM1_0366
Antitoxin ParD1/3/4; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
 0.952
XM1_1133
Antitoxin ParD1; Function of strongly homologous gene; cell process.
 
 
 0.878
recQ
ATP-dependent DNA helicase RecQ; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.773
XM1_1383
Homologs of previously reported genes of unknown function.
  
 
 0.667
XM1_3512
CopG family transcriptional regulator; Function of strongly homologous gene; regulator.
  
 
 0.667
priA
Primosomal protein N'(replication factor Y); Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
       0.617
XM1_1556
Putative Antidote protein, CopG/Arc/MetJ family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
 
 0.539
XM1_0368
Homologs of previously reported genes of unknown function.
       0.458
XM1_0371
TRNA threonylcarbamoyladenosine biosynthesis protein TsaE; Function of strongly homologous gene; enzyme.
       0.420
XM1_0369
Putative inner membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
       0.419
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.