STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0377Putative transcriptional regulator, XRE family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (476 aa)    
Predicted Functional Partners:
XM1_0378
Putative propionyl-CoA carboxylase beta chain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
 0.629
glcB
Malate synthase G (fragment); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
   
 0.597
mutB
Adenosylcobalamin-dependent methylmalonyl-CoA mutase large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.556
Pcca
propionyl-CoA carboxylase alpha chain, biotin-carrying subunit; Function of strongly homologous gene; enzyme.
       0.513
can
Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
       0.507
XM1_4424
Putative transcriptional regulator TetR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
   
 0.495
ribD
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
      
 0.414
XM1_0539
Homologs of previously reported genes of unknown function.
   
 
 0.404
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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