STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
canCarbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (219 aa)    
Predicted Functional Partners:
ecaA
Carbonic anhydrase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.916
Pcca
propionyl-CoA carboxylase alpha chain, biotin-carrying subunit; Function of strongly homologous gene; enzyme.
     
 0.800
XM1_0378
Putative propionyl-CoA carboxylase beta chain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
 0.765
XM1_4782
Putative formate/nitrite transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
  
 0.682
paaY
Transferase involved in phenylacetate degradation; Function of strongly homologous gene; enzyme.
    
 
 0.668
yrdA
Carbonic anhydrase/acetyltransferase; Function of strongly homologous gene; enzyme.
    
 
 0.668
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.577
mutB
Adenosylcobalamin-dependent methylmalonyl-CoA mutase large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.511
XM1_0377
Putative transcriptional regulator, XRE family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.507
cpsB
Mannose-1-phosphate guanyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the mannose-6-phosphate isomerase type 2 family.
     
 0.402
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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