STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0419Homologs of previously reported genes of unknown function. (137 aa)    
Predicted Functional Partners:
XM1_0420
Homologs of previously reported genes of unknown function.
     
 0.850
XM1_0418
Putative Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.828
XM1_0421
Homologs of previously reported genes of unknown function.
       0.569
acs
acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
       0.552
XM1_2765
Putative Molecular chaperone, heat shock Hsp20 family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Belongs to the small heat shock protein (HSP20) family.
   
    0.418
XM1_2763
Homologs of previously reported genes of unknown function.
   
    0.416
XM1_1382
Conserved protein of unknown function（Polyphosphate:AMP phosphotransferase,2-501） Homologs of previously reported genes of unknown function.
   
    0.408
XM1_3173
PPK2 domain-containing protein; Homologs of previously reported genes of unknown function.
   
    0.408
XM1_4006
Putative universal stress protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
   
    0.406
dksA
RNA polymerase-binding transcription factor DksA; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
   
    0.405
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.