STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0443Putative defective integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the 'phage' integrase family. (442 aa)    
Predicted Functional Partners:
XM1_1625
Homologs of previously reported genes of unknown function.
  
     0.756
XM1_0710
Homologs of previously reported genes of unknown function.
  
     0.749
XM1_0499
Integrase; Function of strongly homologous gene; enzyme.
  
   
 0.709
XM1_2825
Putative Integrase-like domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
   
 0.702
XM1_1637
Putative Integrase（ntegrase-like, catalytic core,5-186） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
   
 0.691
XM1_2960
Putative Integrase-like domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
   
 0.683
XM1_0718
Phage integrase family protein; Function of strongly homologous gene; enzyme.
  
   
 0.682
XM1_0460
Homologs of previously reported genes of unknown function.
  
   
 0.651
XM1_0585
Homologs of previously reported genes of unknown function.
  
     0.575
XM1_0096
Putative RNA polymerase sigma factor, sigma-70 family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
  
 0.439
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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