STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0544Conserved protein of unknown function (containing ATPase/P-loop-containing domain); Displays ATPase and GTPase activities. (305 aa)    
Predicted Functional Partners:
XM1_0545
Putative HPr kinase/phosphorylase, regulates carbohydrate metabolism; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
    
 0.937
npr
Phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr); Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
  
 0.809
ptsN
Nitrogen PTS system EIIA component; Function of strongly homologous gene; transporter.
  
  
 0.789
XM1_0543
Phosphotransferase system, mannose/fructose-specific component IIA; Function of strongly homologous gene; transporter.
 
   
 0.729
XM1_4219
Putative ribonuclease G and E (RNA-binding protein AU-1/Ribonuclease E/G 138-255); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 
 0.723
ptsI
Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).
     
 0.690
rne
Ribonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.
   
 
 0.675
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
 
   
 0.605
XM1_0540
Conserved protein of unknown function (RmlC-like cupin domain); Homologs of previously reported genes of unknown function.
       0.547
XM1_0538
Protein of unknown function; No homology to any previously reported sequences.
       0.532
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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