STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0546Conserved protein of unknown function (contain Soluble lytic murein transglycosylase domain); Homologs of previously reported genes of unknown function. (609 aa)    
Predicted Functional Partners:
czcA-2
Putative Flagellar hook protein FlgE; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
 
  
 0.662
XM1_3712
Flagellar capping protein; Function of strongly homologous gene; structure.
 
  
 0.621
XM1_3827
Protein of unknown function; No homology to any previously reported sequences.
  
   
 0.612
XM1_1442
Putative FOG: TPR repeat(Tetratricopeptide-like helica,65-237); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process.
  
   
 0.605
lptD
LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
   
 0.601
XM1_0597
Homologs of previously reported genes of unknown function.
  
     0.594
XM1_3702
Protein of unknown function; No homology to any previously reported sequences.
  
     0.576
XM1_1531
Conserved protein of unknown function (Flagellin, D0/D1 domain); Homologs of previously reported genes of unknown function.
 
 
 0.573
XM1_1247
Homologs of previously reported genes of unknown function.
  
     0.569
mrdA
Cell division protein FtsI/penicillin-binding protein 2; Function of strongly homologous gene; enzyme.
 
  
 0.562
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.