STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0558Homologs of previously reported genes of unknown function. (326 aa)    
Predicted Functional Partners:
trpS
Tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.813
XM1_0611
Homologs of previously reported genes of unknown function.
  
     0.690
murJ
Protein MurJ homolog; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
       0.626
XM1_0556
Homologs of previously reported genes of unknown function.
       0.598
XM1_3702
Protein of unknown function; No homology to any previously reported sequences.
  
     0.574
XM1_0874
Homologs of previously reported genes of unknown function.
  
     0.549
XM1_0557
Homologs of previously reported genes of unknown function.
       0.536
XM1_1247
Homologs of previously reported genes of unknown function.
  
     0.531
XM1_1427
Putative Antifreeze glycopeptide polyprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
    0.523
XM1_0555
Putative Universal stress protein UspA-like nucleotide-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
       0.521
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.