STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0562Homologs of previously reported genes of unknown function. (112 aa)    
Predicted Functional Partners:
XM1_0563
Uncharacterized protein; Homologs of previously reported genes of unknown function.
 
     0.884
XM1_0565
Putative Polyferredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
    0.864
XM1_2244
Putative High-affinity Fe2+/Pb2+ permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
 
   
 0.819
XM1_0564
Porin; Homologs of previously reported genes of unknown function.
 
     0.573
XM1_2038
Putative Nitrite reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 
 0.567
nirF
Protein NirF; Function of strongly homologous gene; enzyme.
   
   0.487
XM1_2528
Putative Quinohemoprotein amine dehydrogenase 40 kDa subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
   0.481
XM1_1576
Conserved protein of unknown function (Tetratricopeptide-like helical,7-163); Homologs of previously reported genes of unknown function.
 
    0.456
nuoM
NADH-quinone oxidoreductase subunit M; Function of strongly homologous gene; enzyme.
    
   0.452
XM1_2198
Putative Ferredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.440
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.