STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0579ABC-type Co2+ transport system permease component-like protein; Function of strongly homologous gene; transporter. (174 aa)    
Predicted Functional Partners:
XM1_0581
Putative ABC-type Co2+ transport system, periplasmic component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
  
  0.989
XM1_0580
Putative cobalt transport protein CbiM; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
    0.962
XM1_0578
Putative ABC-type cobalt transport system, permease component CbiQ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.952
XM1_0577
Putative ABC transporter ATP-binding protein BAB1_1388; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.948
cbiN
Cobalt transport protein CbiN(Cobalt transport protein CbiN,6-71); Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import; Belongs to the CbiN family.
     
  0.900
XM1_4208
Conserved protein of unknown function (Putative SET domain protein); Homologs of previously reported genes of unknown function.
    
 0.602
XM1_0569
Homologs of previously reported genes of unknown function.
  
     0.432
XM1_1934
Homologs of previously reported genes of unknown function.
  
     0.418
XM1_3354
Protein of unknown function; No homology to any previously reported sequences.
  
     0.400
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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