STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0592Homologs of previously reported genes of unknown function; Belongs to the BI1 family. (240 aa)    
Predicted Functional Partners:
XM1_0590
Putative ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.647
XM1_2024
CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
   
  
 0.572
fixK
Nitrogen fixation regulation protein FixK; Function of homologous gene experimentally demonstrated in an other organism; regulator.
   
  
 0.559
XM1_2764
Putative Zn-dependent protease with chaperone function; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
  
 0.514
XM1_1697
Putative cAMP-binding protein(RmlC-like jelly roll fold,16-150); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
  
 0.506
XM1_0589
Putative transporter subunit: ATP-binding component of ABC superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.500
msrB
Peptide methionine sulfoxide reductase MsrB; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the MsrB Met sulfoxide reductase family.
  
   0.464
XM1_0826
Homologs of previously reported genes of unknown function.
  
  
 0.442
yidC
Putative Membrane protein insertase YidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
 
     0.436
XM1_0586
Putative 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
       0.421
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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