STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0607Putative HNH endonuclease family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (186 aa)    
Predicted Functional Partners:
XM1_0606
Putative esterase （Phospholipase/carboxylesterase/thioesterase&#6528 9; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.600
gluQ
Glutamyl-Q tRNA(Asp) synthetase; Function of strongly homologous gene; enzyme; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.500
XM1_1727
Homologs of previously reported genes of unknown function.
  
  
 0.466
XM1_2223
Putative Terminase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.466
XM1_3197
B30.2/SPRY domain-containing protein; Homologs of previously reported genes of unknown function.
  
  
 0.466
rsfS
Conserved protein of unknown function; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
  
  
 0.423
XM1_0129
Homologs of previously reported genes of unknown function.
 
    0.413
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.