STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hyaBHydrogenase 1, large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (598 aa)    
Predicted Functional Partners:
hyaA
Hydrogenase 1, small subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.998
XM1_2645
Putative Uptake hydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.993
hybO
Hydrogenase 2, small subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.993
hyaC
Hydrogenase 1, b-type cytochrome subunit; Function of homologous gene experimentally demonstrated in an other organism; carrier.
 
 
 0.992
hupS
Uptake hydrogenase small subunit; Function of strongly homologous gene; putative enzyme.
 
 0.992
hupK
Hydrogenase expression/formation protein HupK; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.980
hyaD
Hydrogenase maturation protein hyaD; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.966
XM1_3045
Cytochrome b subunit of the bc complex; Function of strongly homologous gene; enzyme.
  
 
 0.956
XM1_2644
Putative Uptake hydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 
0.925
XM1_2181
Putative Fe-S-cluster-containing hydrogenase components 2; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
  
 
 0.923
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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