STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0774Putative lipopolysaccharide core biosynthesis; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (372 aa)    
Predicted Functional Partners:
XM1_0775
Homologs of previously reported genes of unknown function.
 
     0.865
XM1_0772
Putative ADP-heptose:LPS heptosyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    
0.842
XM1_0773
Homologs of previously reported genes of unknown function.
 
    
0.799
XM1_1531
Conserved protein of unknown function (Flagellin, D0/D1 domain); Homologs of previously reported genes of unknown function.
 
 
 
 0.788
XM1_0895
Homologs of previously reported genes of unknown function; Belongs to the DegT/DnrJ/EryC1 family.
 
   
 0.774
XM1_3633
Protein of unknown function; No homology to any previously reported sequences.
  
     0.764
XM1_2052
Homologs of previously reported genes of unknown function.
  
     0.759
XM1_1187
Homologs of previously reported genes of unknown function.
  
     0.742
XM1_2915
Homologs of previously reported genes of unknown function.
  
     0.740
XM1_4513
Conserved protein of unknown function (Staphylococcal nuclease 40-167); Homologs of previously reported genes of unknown function.
 
     0.723
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.