STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0781Conserved protein of unknown function（contain Histidine kinase-like domain） Homologs of previously reported genes of unknown function. (421 aa)    
Predicted Functional Partners:
rcp
Response regulator rcp1; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
     0.940
XM1_0782
Putative periplasmic binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.773
rcp-3
Two-component response regulator (CheY-like); Function of strongly homologous gene; regulator.
 
     0.749
rcp-2
Response regulator rcp1; Function of strongly homologous gene; regulator.
  
     0.743
XM1_3873
Signal transduction response regulator, CheY-like response regulator; Function of strongly homologous gene; regulator.
  
 
   0.743
rcp-4
Two-component response regulator (CheY-like); Function of strongly homologous gene; regulator.
  
     0.742
XM1_1592
Protein of unknown function domain,549-669); No homology to any previously reported sequences.
 
 
 
 0.626
XM1_0659
Conserved protein of unknown function （contain Sensor protein CheY-like domain） Homologs of previously reported genes of unknown function.
 
 
 
 0.507
XM1_1591
Membrane protein of unknown function(PAS domain,112-232); No homology to any previously reported sequences.
 
 
 
 0.500
XM1_2919
Putative blue-light-activated sensor histidine kinase (FixL-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
 
 0.493
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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