STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0806Homologs of previously reported genes of unknown function. (282 aa)    
Predicted Functional Partners:
XM1_0805
Conserved protein of unknown function (Transport-associated and nodulation domain 129-192); Homologs of previously reported genes of unknown function.
 
     0.851
gshB
Glutathione synthetase; Function of strongly homologous gene; enzyme; Belongs to the prokaryotic GSH synthase family.
 
     0.816
rsmL
Ribosomal RNA small subunit methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.686
XM1_0804
Conserved protein of unknown function (Restriction endonuclease type II--like 13-126); Homologs of previously reported genes of unknown function; Belongs to the UPF0102 family.
       0.686
XM1_0368
Homologs of previously reported genes of unknown function.
  
     0.600
XM1_0802
Putative ABC-type branched-chain amino acid transport systems, periplasmic component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.549
XM1_3494
Uncharacterized protein; Homologs of previously reported genes of unknown function.
  
     0.521
XM1_4389
Cell shape determining protein MreD; Function of strongly homologous gene; structure.
  
     0.514
XM1_0587
Homologs of previously reported genes of unknown function.
  
     0.468
XM1_4377
Putative Protein phosphatase CheZ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.458
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.