STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0857Homologs of previously reported genes of unknown function; Belongs to the UPF0434 family. (65 aa)    
Predicted Functional Partners:
XM1_0858
Homologs of previously reported genes of unknown function.
 
     0.868
XM1_0856
Putative peptidase S16, lon N-terminal; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.812
XM1_0855
Putative Thioredoxin domain-containing protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.811
ybaK
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
       0.769
dnaA
Chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
  
     0.540
kdsB
3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
  
    0.444
kdsB-2
3-deoxy-manno-octulosonate cytidylyltransferase; Function of strongly homologous gene; enzyme.
  
    0.444
hinT
Purine nucleoside phosphoramidase; Function of strongly homologous gene; enzyme.
  
    0.438
XM1_2051
Diadenosine tetraphosphate hydrolase and other HIT family hydrolase; Function of strongly homologous gene; enzyme.
  
    0.415
prmC
Release factor glutamine methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
  
 
 0.404
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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