STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0858Homologs of previously reported genes of unknown function. (150 aa)    
Predicted Functional Partners:
XM1_0857
Homologs of previously reported genes of unknown function; Belongs to the UPF0434 family.
 
     0.868
XM1_0855
Putative Thioredoxin domain-containing protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.851
XM1_0856
Putative peptidase S16, lon N-terminal; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.812
ybaK
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
       0.769
XM1_4363
Putative iron-sulfur protein NUBPL (Protein mrp homolog); Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
      0.660
thrB
Homoserine kinase; Function of strongly homologous gene; enzyme; Belongs to the pseudomonas-type ThrB family.
  
     0.450
XM1_4340
Putative Acyl-CoA N-acyltransferase domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.435
XM1_4556
Conserved protein of unknown function (Armadillo-type fold 90-314; Homologs of previously reported genes of unknown function.
  
    0.412
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.