STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0873Conserved protein of unknown function （TPR repeat-containing protein） Homologs of previously reported genes of unknown function. (511 aa)    
Predicted Functional Partners:
XM1_4709
Putative methyltransferase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.721
XM1_1478
Putative Sensor protein gacS(CheY-like superfamily,782-900;905-1026;1045-1177); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
 
 0.697
mamA
Magnetosome protein MamA; Function of strongly homologous gene; membrane component.
 
   
 0.652
XM1_2759
Homologs of previously reported genes of unknown function.
 
  
 0.609
XM1_0874
Homologs of previously reported genes of unknown function.
  
    0.583
XM1_3212
Protein of unknown function; No homology to any previously reported sequences.
 
   
 0.581
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.515
XM1_1549
Putative O-linked N-acetylglucosamine transferase(Tetratricopeptide-like helical,8-157); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     0.510
XM1_3481
4Fe-4S ferredoxin, iron-sulfur binding; Function of strongly homologous gene; carrier.
  
 
 0.494
XM1_1576
Conserved protein of unknown function (Tetratricopeptide-like helical,7-163); Homologs of previously reported genes of unknown function.
 
   
0.470
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.