STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0877Homologs of previously reported genes of unknown function. (189 aa)    
Predicted Functional Partners:
XM1_0878
Putative DNA polymerase III, delta subunit (holA); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    0.860
leuS
leucyl-tRNA synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.828
XM1_0879
Homologs of previously reported genes of unknown function.
       0.784
XM1_0875
Homologs of previously reported genes of unknown function.
 
     0.782
XM1_0874
Homologs of previously reported genes of unknown function.
 
     0.751
XM1_1348
Putative phasin family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.675
XM1_3702
Protein of unknown function; No homology to any previously reported sequences.
  
     0.629
XM1_1247
Homologs of previously reported genes of unknown function.
  
     0.593
XM1_0611
Homologs of previously reported genes of unknown function.
  
     0.571
lptD
LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.541
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.