STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0878Putative DNA polymerase III, delta subunit (holA); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (340 aa)    
Predicted Functional Partners:
XM1_3204
DNA polymerase III, delta prime subunit; Function of strongly homologous gene; enzyme.
  
 
 0.992
dnaN
DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
 
 
 0.986
dnaX
DNA polymerase III, gamma/tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
   
 0.986
holC
DNA polymerase III subunit chi; Function of strongly homologous gene; enzyme.
  
 
 0.980
dnaE
DNA polymerase III subunit alpha; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.979
dnaQ
DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.
  
 
 0.947
XM1_0082
Conserved protein of unknown function（contain Ribonuclease H-like domain） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
    
 0.940
XM1_4743
Putative DNA polymerase III, epsilon subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
    
 0.940
XM1_3964
DNA polymerase III; Function of strongly homologous gene; enzyme.
    
 0.926
XM1_0877
Homologs of previously reported genes of unknown function.
 
    0.860
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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