STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gdhBNAD-specific glutamate dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (1604 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase (NADPH) large chain; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.947
gltB-3
Glutamate synthase, large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.947
putA
Fused DNA-binding transcriptional regulator; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
  
  
 0.935
glnA
Glutamine synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.917
gdhA
NADP-specific glutamate dehydrogenase; Function of strongly homologous gene; enzyme; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
    
 0.911
gltD
Glutamate synthase, 4Fe-4S protein, small subunit; Function of strongly homologous gene; carrier.
     
 0.906
gltB-2
Glutamate synthase [NADPH] small chain; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.906
nirB
Nitrite reductase, large subunit, NAD(P)H-binding; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
    
  0.903
aatA
Protein of unknown function (RecA-family ATPase 148-208); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.901
nirD
Assimilatory nitrite reductase [NAD(P)H] small subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
  0.900
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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