STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0884Conserved protein of unknown function （contain Carbamoyltransferase domain） Homologs of previously reported genes of unknown function. (612 aa)    
Predicted Functional Partners:
XM1_0883
Homologs of previously reported genes of unknown function.
 
     0.951
XM1_0882
Homologs of previously reported genes of unknown function.
 
     0.948
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
  
    0.753
XM1_0885
Homologs of previously reported genes of unknown function.
       0.727
gdhB
NAD-specific glutamate dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.629
XM1_0878
Putative DNA polymerase III, delta subunit (holA); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.491
XM1_0879
Homologs of previously reported genes of unknown function.
       0.463
leuS
leucyl-tRNA synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.436
XM1_0877
Homologs of previously reported genes of unknown function.
       0.421
XM1_3101
Putative 3-phenylpropionic transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
   
    0.405
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.