STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phnW2-aminoethylphosphonate--pyruvate transaminase; Involved in phosphonate degradation; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily. (374 aa)    
Predicted Functional Partners:
XM1_0951
Putative phosphonopyruvate decarboxylase or sulfopyruvate decarboxylase, beta subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
 
 
 0.955
XM1_0896
Putative Mannose-1-phosphate guanyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    0.892
pepM
Phosphoenolpyruvate phosphomutase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.782
XM1_0898
Conserved protein of unknown function （contain Radical_SAM domain） Homologs of previously reported genes of unknown function.
       0.773
XM1_0899
Protein of unknown function; No homology to any previously reported sequences.
       0.773
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
  
 0.542
gltB
Glutamate synthase (NADPH) large chain; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.541
gltB-3
Glutamate synthase, large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.541
XM1_0950
Putative phosphonopyruvate decarboxylase or sulfopyruvate decarboxylase, alpha subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.538
lldD
L-lactate dehydrogenase, FMN-linked; Function of strongly homologous gene; enzyme.
  
 0.531
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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