STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0928Putative transketolase C-terminal section; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (309 aa)    
Predicted Functional Partners:
XM1_0927
Putative transketolase N-terminal section; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 0.999
XM1_1808
Putative transketolase N-terminal section(Transketolase, N-termina,20-275); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 0.999
rpe
Ribulose-5-phosphate 3-epimerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the ribulose-phosphate 3-epimerase family.
 
 
 0.957
tal
Putative transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
 
 
 0.939
tktA
Transketolase (TK); Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
  
 
 0.933
rpiB
Ribose 5-phosphate epimerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.929
XM1_1807
Putative 1-deoxy-D-xylulose-5-phosphate synthase(Transketolase-like, C-terminal,187-310); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 
0.918
XM1_4155
Putative PfkB family carbohydrate kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the carbohydrate kinase PfkB family.
 
  
  0.916
czcC-2
Cobalt-zinc-cadmium resistance protein CzcC; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
    
 0.910
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
    
 0.907
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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