STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0968Homologs of previously reported genes of unknown function. (525 aa)    
Predicted Functional Partners:
neuA
N-acylneuraminate cytidylyltransferase neuA; Function of strongly homologous gene; enzyme.
       0.785
neuB
N-acetylneuraminate synthase neuB; Function of strongly homologous gene; enzyme.
       0.779
XM1_0970
Myo-inositol 2-dehydrogenase; Function of strongly homologous gene; enzyme.
       0.757
XM1_0971
Putative dehydrogenase and related protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.757
hisC
Histidinol-phosphate aminotransferase; Function of strongly homologous gene; enzyme.
       0.745
kdsB-2
3-deoxy-manno-octulosonate cytidylyltransferase; Function of strongly homologous gene; enzyme.
       0.717
XM1_0975
Putative D-3-phosphoglycerate dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.716
fabG
3-oxoacyl-[acyl-carrier-protein] reductase FabG; Function of strongly homologous gene; enzyme.
       0.713
XM1_0974
3-dehydroquinate synthetase; Function of strongly homologous gene; enzyme.
       0.713
XM1_0976
Conserved protein of unknown function (S-adenosyl-L-methionine-dependent methyltransferases 61-272); Homologs of previously reported genes of unknown function.
       0.702
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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