STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0978Homologs of previously reported genes of unknown function. (579 aa)    
Predicted Functional Partners:
XM1_0977
Putative Fe-S oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.777
neuB
N-acetylneuraminate synthase neuB; Function of strongly homologous gene; enzyme.
       0.570
rfbF
Glucose-1-phosphate cytidylyltransferase; Function of strongly homologous gene; enzyme.
       0.551
kdsB-2
3-deoxy-manno-octulosonate cytidylyltransferase; Function of strongly homologous gene; enzyme.
       0.538
XM1_0980
Putative UDP-glucose 4-epimerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.538
fabG
3-oxoacyl-[acyl-carrier-protein] reductase FabG; Function of strongly homologous gene; enzyme.
       0.535
XM1_0974
3-dehydroquinate synthetase; Function of strongly homologous gene; enzyme.
       0.535
XM1_0975
Putative D-3-phosphoglycerate dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.534
XM1_0976
Conserved protein of unknown function (S-adenosyl-L-methionine-dependent methyltransferases 61-272); Homologs of previously reported genes of unknown function.
       0.523
hisC
Histidinol-phosphate aminotransferase; Function of strongly homologous gene; enzyme.
       0.516
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.