STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_0996Putative lipid A core-O-antigen ligase and related enzyme; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (430 aa)    
Predicted Functional Partners:
asnB
Asparagine synthetase; Function of strongly homologous gene; enzyme.
  
    0.811
gmhA-2
Phosphoheptose isomerase; Function of strongly homologous gene; enzyme.
       0.784
wecB
UDP-N-acetylglucosamine 2-epimerase; Function of strongly homologous gene; enzyme; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
     
 0.783
XM1_0999
Protein of unknown function; No homology to any previously reported sequences.
       0.716
cpsB
Mannose-1-phosphate guanyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.703
XM1_1616
Conserved protein of unknown function(Uncharacterised conserved protein UCP020408,314-408); Homologs of previously reported genes of unknown function.
  
  
 0.659
XM1_3497
Conserved protein of unknown function(containing AsmA_2 domain,802-1041); Homologs of previously reported genes of unknown function.
 
     0.658
XM1_2784
Homologs of previously reported genes of unknown function.
  
     0.657
XM1_2337
Homologs of previously reported genes of unknown function.
  
     0.623
XM1_2364
Homologs of previously reported genes of unknown function.
  
     0.619
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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