STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1002Putative PLP-dependent enzyme possibly involved in cell wall biogenesis; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme; Belongs to the DegT/DnrJ/EryC1 family. (419 aa)    
Predicted Functional Partners:
XM1_1001
Glycosyl transferase, family 2; Function of strongly homologous gene; enzyme.
  
  
 0.817
XM1_1006
Predicted nucleoside-diphosphate sugar epimerase; Function of strongly homologous gene; enzyme.
 
  
 0.788
XM1_1003
Homologs of previously reported genes of unknown function.
     
 0.784
XM1_1000
Putative FAD-dependent pyridine nucleotide-disulfide oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.780
XM1_1004
Protein of unknown function; No homology to any previously reported sequences.
       0.779
XM1_0984
Putative NAD(P)-dependent oxidoreductase, GFO/IDH/MOCA family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 0.732
XM1_0993
Putative acetyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.658
XM1_0916
Conserved protein of unknown function （RmlC-like cupin domain） Homologs of previously reported genes of unknown function.
 
  
 0.651
XM1_1032
Putative dehydrogenase and related protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 0.629
kdsD
D-arabinose 5-phosphate isomerase（Sugar isomerase (SIS),46-171） Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the SIS family. GutQ/KpsF subfamily.
  
 
 0.622
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.