STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1033Nucleoside-diphosphate-sugar epimerase; Function of strongly homologous gene; enzyme. (353 aa)    
Predicted Functional Partners:
rkpK
UDP-glucose 6-dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 0.967
XM1_1043
Putative UDP-glucuronate decarboxylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 
0.914
XM1_2914
Putative UDP-glucose epimerase, containing with NAD(P)-binding domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 
0.906
XM1_1036
Glycosyltransferase; Function of strongly homologous gene; enzyme.
 
 
 0.891
XM1_1035
Homologs of previously reported genes of unknown function.
  
    0.795
XM1_1032
Putative dehydrogenase and related protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.787
XM1_1034
SAM-dependent methyltransferase; Function of strongly homologous gene; enzyme.
     
 0.785
capL
Protein CapL; Function of strongly homologous gene; enzyme; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.767
XM1_0960
Putative UDP-glucuronic acid decarboxylase 1; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.763
XM1_1037
Putative ADP-heptose:LPS heptosyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.722
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.