STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmhBD-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (182 aa)    
Predicted Functional Partners:
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
  
 0.993
XM1_1801
Putative Nucleotidyltransferase(Nucleotidyl transferase,11-234); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 0.992
XM1_1802
D-glycero-alpha-D-manno-heptose-7-phosphate kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.989
rfaE
Fused heptose 7-phosphate kinase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.
  
 0.981
gmhA-2
Phosphoheptose isomerase; Function of strongly homologous gene; enzyme.
  
 0.976
XM1_0961
Putative nucleotide-diphospho-sugar transferases; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.941
XM1_1037
Putative ADP-heptose:LPS heptosyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.869
XM1_1036
Glycosyltransferase; Function of strongly homologous gene; enzyme.
  
 
 0.819
XM1_1039
Glycosyltransferase; Function of strongly homologous gene; enzyme.
     
 0.793
XM1_1041
Putative ribosomal RNA small subunit methyltransferase B; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
       0.784
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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