STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1047Xylanase/chitin deacetylase; Function of strongly homologous gene; enzyme. (231 aa)    
Predicted Functional Partners:
XM1_1046
Glycosyltransferase(Glycosyl transferase, family 1,173-344;2-366); Function of strongly homologous gene; enzyme.
     
 0.761
XM1_1410
Putative xylanase/chitin deacetylase (fragment)(Polysaccharide deacetylase,21-224); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.721
XM1_1044
Conserved protein of unknown function(3;342); Homologs of previously reported genes of unknown function.
 
   
 0.697
XM1_1045
Glycosyltransferase(1;153); Function of strongly homologous gene; enzyme.
  
  
 0.586
XM1_2184
Putative Cellulose synthase catalytic subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.560
XM1_1048
Uncharacterized protein; Homologs of previously reported genes of unknown function.
       0.537
XM1_4360
Putative glycosyl transferase, putative membrane-associated protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.486
XM1_4557
Putative glycosyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.486
XM1_1988
Glycosyltransferase(Glycosyl transferase, family 2, hopene-associated, HpnB,7-379); Function of strongly homologous gene; enzyme.
  
  
 0.461
XM1_0151
Putative C-5 cytosine-specific DNA methylase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.422
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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