STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1052dTDP-glucose pyrophosphorylase; Function of strongly homologous gene; enzyme. (247 aa)    
Predicted Functional Partners:
XM1_1054
Putative phosphatase/phosphohexomutase(HAD-like domain,4-191); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    0.890
XM1_1050
Homologs of previously reported genes of unknown function.
 
     0.819
XM1_1053
Nucleoside-diphosphate-sugar pyrophosphorylase(2-242); Function of strongly homologous gene; enzyme.
 
    
0.814
XM1_1055
Uncharacterized protein; Homologs of previously reported genes of unknown function.
       0.788
XM1_1051
Putative Peptidoglycan O-acetyltransferase(Membrane bound O-acyl transferase, MBOAT,121-380); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the membrane-bound acyltransferase family.
       0.781
rkpK
UDP-glucose 6-dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.763
rffG
dTDP-glucose 4,6-dehydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.763
XM1_1023
Putative Colanic acid exporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
  
 0.760
cpsB
Mannose-1-phosphate guanyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.706
XM1_2652
Putative Phenolpthiocerol synthesis polyketide synthase ppsA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
 0.622
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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