STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aroKShikimate kinase(Shikimate kinase,126-281); Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. (290 aa)    
Predicted Functional Partners:
XM1_1066
Homologs of previously reported genes of unknown function.
 
     0.880
boxC
Benzoyl-CoA-dihydrodiol lyase; Function of strongly homologous gene; enzyme.
 
   
 0.853
XM1_1067
Putative hydrolase or acyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.848
boxB
Benzoyl-CoA oxygenase component B; Function of strongly homologous gene; enzyme.
 
     0.848
boxA
Benzoyl-CoA oxygenase component A; Function of strongly homologous gene; enzyme.
 
   
 0.836
XM1_0974
3-dehydroquinate synthetase; Function of strongly homologous gene; enzyme.
 
  
 0.783
aroB
3-dehydroquinate synthase(3-dehydroquinate synthase AroB,18-361); Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
 
  
 0.774
XM1_1072
Putative thioesterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    0.726
XM1_1377
Putative Chorismate mutase(Chorismate mutase,12-90); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.689
XM1_1064
Formate dehydrogenase beta subunit; Function of strongly homologous gene; enzyme.
     
 0.679
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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